Four of these INGOs are based in the UK, two are from the US and one each from China, Denmark, Switzerland, the Netherlands and Pakistan, DAWN reported.
A letter issued by the SSP says these organisations applied for registration with the interior ministry which were rejected.
The operation of the INGOs came into notice during a meeting held to advise security for sensitive installations, including for foreign missions.
The INGOs which were denied permission to operate are the Zia-ul Ummat Foundation UK, Al-Khair Foundation UK, Safe World UK, International Alert UK, Centre For International Enterprise USA, Acumen Fund Inc USA, AVRDC-World Vegetable Centre Taiwan Republic of China, Central Asia Education Trust Pakistan, Danish Refugee Council Denmark, Foundation Open Society Institute Pakistan Switzerland and Oxfam Novib Netherlands.